PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.NML6W
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LSD
Protein Properties Length: 109aa    MW: 12061.7 Da    PI: 8.3812
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.NML6WgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD145.81e-145983125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 CggC +lL+YP+GAp VRC++C +V
  Araip.NML6W 59 CGGCAVLLMYPYGAPQVRCSSCRFV 83
                 **********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.0E-115684IPR005735Zinc finger, LSD1-type
PfamPF069438.6E-125983IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MMQLDEIKTQ REVGEDDDGP PPGWQPIHTP PPQPPPQSQS RSRSPPRCPS TDQVGQVKCG  60
GCAVLLMYPY GAPQVRCSSC RFVTEIGAHN KRPPWSEQQR KPTLPKTAC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015956464.13e-58PREDICTED: protein LOL2-like
SwissprotO654268e-21LOL2_ARATH; Protein LOL2
TrEMBLA0A0B2PIB05e-33A0A0B2PIB0_GLYSO; Protein LOL2
TrEMBLA0A0R0J6645e-33A0A0R0J664_SOYBN; Uncharacterized protein
STRINGGLYMA07G31600.11e-32(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.15e-22lsd one like 2