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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Araip.NML6W | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family | LSD | ||||||||
| Protein Properties | Length: 109aa MW: 12061.7 Da PI: 8.3812 | ||||||||
| Description | LSD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-LSD1 | 45.8 | 1e-14 | 59 | 83 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggC +lL+YP+GAp VRC++C +V
Araip.NML6W 59 CGGCAVLLMYPYGAPQVRCSSCRFV 83
**********************998 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| TIGRFAMs | TIGR01053 | 3.0E-11 | 56 | 84 | IPR005735 | Zinc finger, LSD1-type |
| Pfam | PF06943 | 8.6E-12 | 59 | 83 | IPR005735 | Zinc finger, LSD1-type |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 109 aa Download sequence Send to blast |
MMQLDEIKTQ REVGEDDDGP PPGWQPIHTP PPQPPPQSQS RSRSPPRCPS TDQVGQVKCG 60 GCAVLLMYPY GAPQVRCSSC RFVTEIGAHN KRPPWSEQQR KPTLPKTAC |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015956464.1 | 3e-58 | PREDICTED: protein LOL2-like | ||||
| Swissprot | O65426 | 8e-21 | LOL2_ARATH; Protein LOL2 | ||||
| TrEMBL | A0A0B2PIB0 | 5e-33 | A0A0B2PIB0_GLYSO; Protein LOL2 | ||||
| TrEMBL | A0A0R0J664 | 5e-33 | A0A0R0J664_SOYBN; Uncharacterized protein | ||||
| STRING | GLYMA07G31600.1 | 1e-32 | (Glycine max) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF13026 | 31 | 32 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G21610.1 | 5e-22 | lsd one like 2 | ||||
| ©2010-, Center
for Bioinformatics, Peking University Last Modified: 2016-10-15 Questions or Comments, please contact  |
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